Detection of class 1 integron in Acinetobacter baumannii isolates collected from nine hospitals in Turkey

dc.contributor.authorÇiçek, Ayşegül Çopur
dc.contributor.authorDüzgün, Azer Özad
dc.contributor.authorSaral, Ayşegül
dc.contributor.authorKayman, Tuba
dc.contributor.authorÇIzmecI, Zeynep
dc.contributor.authorBalci, Pervin Özlem
dc.contributor.authorDal, Tuba
dc.contributor.authorFırat, Mehmet
dc.contributor.authorTosun, İsmail
dc.contributor.authorAltıntop, Yasemin Ay
dc.contributor.authorÇalışkan, Ahmet
dc.contributor.authorYazıcı, Yelda
dc.contributor.authorSandallı, Cemal
dc.date.accessioned2020-12-19T20:15:57Z
dc.date.available2020-12-19T20:15:57Z
dc.date.issued2013
dc.departmentRTEÜ, Tıp Fakültesi, Temel Tıp Bilimleri Bölümü
dc.descriptionPubMed: 23998017
dc.description.abstractObjective: To investigate the antibiotic resistance genes inserted into class 1 and class 2 integrons in Acinetobacter baumannii (A. baumannii) isolates obtained from nine different cities in Turkey. Methods: A collection of 281 A. baumannii clinical isolates were collected from nine diferent state hospitals in Turkey and were confirmed as A. baumannii by conventional biochemical, API testing and bla-OXA-51 specific PCR. The isolates were examined by PCR for existence of class 1 and 2 integron gene cassettes. Results: They were characterized by antimicrobial susceptibility testing and the highest resistance rates were determined for piperacillin (90.03%), ciprofloxacin (87.54%), cefepime and trimethoprim/sulfamethoxazole (81.13%). The lowest resistance rates was for cefotaxime (3.55%). class I integrons were detected in 6.4% (18/281) of A. baumannii strains and no class 2 integron was detected. The gene cassettes of class 1 integrons AacC1-AAC(3) I-aadA1, AacC1-aadA1, AAC(3)-I, AAC(3)-I -AAC(3)-I -aadA1, TEM-1, AAC(3)-I-aadA1 - AAC(3)-I -AAC(3)-I, AAC(3)-I -AAC(3)-I -AAC(3)-I -aadA1, AAC(3)-I - aadA1, AAC(3)-I-AAC(3)-I, AAC(3)-I-aadA1-AAC(3)-I-aadA1, AAC(3)-I-AAC(3)-I-aadA1-AAC(3)-I-aadA1 were detected in eighteen strains. The aac genes family were most frequently found integrated into the class 1 integrons and it was followed by aadA genes and TEM-1 genes. Conclusions: This is an extensive study on the distribution of class 1 integron among A. baumannii in Turkey. In addition to these, two new alleles were observed. Their percentage rates of similarity to other cassettes are 95% aadA1 (TKA18) and 89% aadA1 (ANKA3). © 2013 Asian Pacific Tropical Biomedical Magazine.
dc.description.sponsorshipArticle?history: Received?26?Jun?2013 Received?in?revised?form?30?Jun,?2nd?revised?form?3?Jul,?3rd?revised?form?13?Jul?2013 Accepted?23?Aug?2013 Available?online?28?Sep?2013 ????*Corresponding?author:?Cemal?Sandalli,?Department?of?Biology,?Faculty?of?Arts?&? Sciences,?Recep?Tayyip?Erdogan?University,?53100?Rize,?Turkey. ?????Tel:?+90?464?223?6126? ?????Fax:?+90?464?223?4019 ?????E-mail:?cemal.sandalli@erdogan.edu.tr ?????Foundation?Project:?Supported?by?Recep?Tayyip?Erdogan?University?(Grant?No.?BAP-2012.102.03.4.?and?BAP-2013.102.03.4).
dc.description.sponsorship???This?work?was?supported?by?Recep?Tayyip?Erdogan? University,?Research?Fund?Grants?BAP-2012.102.03.4.?and? BAP-2013.102.03.4.
dc.identifier.citationÇıçek, A. Ç., Düzgün, A. Ö., Saral, A., Kayman, T., Çızmecı, Z., Balcı, P. Ö., Dal, T., Fırat, M., Tosun, İ., Alıtntop, Y. A., Çalışkan, A., Yazıcı, Y., & Sandallı, C. (2013). Detection of class 1 integron in Acinetobacter baumannii isolates collected from nine hospitals in Turkey. Asian Pacific journal of tropical biomedicine, 3(9), 743–747. https://doi.org/10.1016/S2221-1691(13)60149-5
dc.identifier.doi10.1016/S2221-1691(13)60149-5
dc.identifier.endpage747
dc.identifier.issn2221-1691
dc.identifier.issue9
dc.identifier.pmid23998017
dc.identifier.scopus2-s2.0-84883257201
dc.identifier.scopusqualityQ2
dc.identifier.startpage743
dc.identifier.urihttps://doi.org/10.1016/S2221-1691(13)60149-5
dc.identifier.urihttps://hdl.handle.net/11436/4091
dc.identifier.volume3
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorÇiçek, Ayşegül Çopur
dc.institutionauthorSandallı, Cemal
dc.language.isoen
dc.publisherElsevier
dc.relation.ispartofAsian Pacific Journal of Tropical Biomedicine
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectAcinetobacter baumannii
dc.subjectClass 1 integron
dc.subjectGene cassette
dc.subjectResistance
dc.titleDetection of class 1 integron in Acinetobacter baumannii isolates collected from nine hospitals in Turkey
dc.typeArticle

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